I guess the simple answer to this one is... it depends.
When you factor in the higher Condo fees into the cash flow analyzer what does the bottom line cash flow number tell you? As well, if your Condo fees include utilities, typically you can charge more rent for these units, as you tenant will not have to pay for their own utilities.
Another thing to look into if the condo fees are high... what exactly is the money going towards? Management, maintenance, reserve fund to install new windows, paint, roof? etc. It is not a bad thing if your condo fees are going toward improving the property... but balance this against the cash flows.
On the other hand, I am also wary of properties that have too low of Condo fees, because they may be underfunding the reserve fund, and you may be in for a special assessment in the future
This where the Condo Due Diligence checklist becomes very valuable. Dig into the papers you get from your condo due diligence, talk to some of the board members, and get to the bottom of whats going on.
The bottom line is Condo fees are an expense, and what does the numbers do to your cash flows when you plug these expenses into your analysis?
Cheers